List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results but also for improvi...-end short reads http://omictools.com/mapview-s1367.html MultiPipMaker Computes alig...tudies http://sing.ei.uvigo.es/pileline/pilelinegui.html...2297 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as...netics.uga.edu/retrolab/data/LTR_Struc.html LTR_MINER http://genomebiol.../wesslercluster.plantbio.uga.edu/mak06.html MaskerAid http://blast.wust...ts Finder http://tandem.bu.edu/trf/trf.html...2287 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms” , is relatively common in prokaryotes and single-c...863 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used to build...Tutorial A Byte of Python (3.x) (HTML, PDF, EPUB, Mobi) A Guide to...in Python the antitextbook (3.x) (HTML, PDF, EPUB, Mobi) Building M...on 2 Official Documentation (PDF, HTML...2268 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bi...o/picard/command-line-overview.html Chromosome-scale scaffolding...software/algorithms/algorithms.html Measuring the distance betwee...://www.htslib.org/doc/samtools.html How To Filter Mapped Reads Wi...-1.02.00/README.lastz-1.02.00a.html...2255 days ago
Installing Bio::SCF perl module
Most Perl modules are written in Perl, some use XS (they are written in C) so require a C compiler (it's easy to get this setup - don't panic)...2231 days ago
Protein-Protein Interaction Sites Predictions !
The study of Protein–Protein Interactions (PPIs) has a crucial role in biology, medicine and the pharmaceutical industry. PPIs can be investigated from two aspec...2215 days ago
Ligand Docking Tools and Software !
Ligand docking referred to cases where small molecule (“ligand”) is being docked into much larger macromolecule ("target"). The following is partial list o...2215 days ago
Tools for Protein-Protein Docking !
Predicting the structure of protein–protein complexes using docking approaches is a difficult problem whose major challenges include identifying correct solution...2215 days ago
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