Results for "Heterozygosity"
Blogs
Online resources on must-read papers in evolutionary biology, for a literature club
...and J. L. Hubby. 1966. A molecular approach to the study of genic heterozygosity in natural populations. II. Amount of variation and degree of heterozygosity in natural populations of Dr...680 days ago
Must read paper and books in evolution biology !
...and J. L. Hubby. 1966. A molecular approach to the study of genic heterozygosity in natural populations. II. Amount of variation and degree of heterozygosity in natural populations of Dr...581 days ago
Bookmarks
- ...ate the overall characteristics of a genome, including genome size, heterozygosity rate, and repeat content from...4 simulated and 16 real datasets with a wide range in genome sizes, heterozygosity levels, and error rates. Avai...
2349 days ago
PureCN: copy number calling and SNV classification using targeted short read sequencing
This package estimates tumor purity, copy number, and loss of heterozygosity (LOH), and classifies single nucleotide variants (SNVs) by somatic status and clonality. PureCN is designed fo...2100 days ago
- +3 more Bookmarks
Top-level pages
Apps for Busy Bioinformatics Researchers !!!
...and learning purposes. Visualize whole human genome sequencing data including small variations, copy number variations (CNVs), and loss of heterozygosity (LOH) events Quickly find va...3545 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
..., DNA Copy number including allele specific copy number and Loss of Heterozygosity (LOH), and ChIP, and methylat...am; “accurate detection of copy number alteration and loss of heterozygosity in impure and aneuploid tumor...2912 days ago
Bio-Scripts
Bash script to simulate a genome !
..._upper.fasta.gz # Convert to diploid with approximately 2% heterozygosity rate, max indels=20bp # muta...omic.fna_upper.fasta.gz | \ grep -v ">"|wc -m # 140687135 # 2% heterozygosity is how many bases calc 0.02\...921 days ago
Tags
- Summary: GenomeScope is an open-source web tool to rapidly estimate the overall characteristics of a genome, including genome size, heterozygosity rate, and repeat content from unprocessed short reads. These features are essential for studying genome evolution, and help to choose para...
Tags: Bioinformatics, Analysis, NGS, GenomeScope, Genome, Stats, Estimate, Heterozygosity, repeat content, Statistical
2349 days ago
How to estimate the heterozygosity ?
I am working on a new genome, and wondering about prediction methods for heterozygosity in the genome. Any tools suggestions and helps are welcome.Tags: heterozygosity, estimate, genome, reads
1975 days ago
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Comments
- ...ger FLOAT increases the number of bubbles merged. If heterozygosity of the sample is high, large...FLOAT increases the number of bubbles merged. If heterozygosity of the sample is high, large...
2802 days ago
