Next generation sequencing in R or bioconductor environment
...n BayesPeak BayesPeak is a peak calling package for identifying DNA binding sites of proteins in ChIP-Seq experiments. Its algorithm uses hidden Markov models (HMM) and Bayesian statistica...3641 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo a...Model-based Analysis for ChIP-Seq. MACS empirically models the length of the sequenced C...at using RNA-Seq short reads to build de novo gene models. First, candidate exons are b...3535 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo...Model-based Analysis for ChIP-Seq. MACS empirically models the length of the sequenced C...at using RNA-Seq short reads to build de novo gene models. First, candidate exons are b...3259 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to understand the different processes insid...Interactive tool for building, visualizing and sharing gene regulatory network models over the web http://www.biot...2304 days ago
Binding Site Prediction in Protein !
The interaction between proteins and other molecules is fundamental to all biological... The server utilizes protein-structure prediction to provide structural models of the binding site. Ligands...2219 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers many different to...elease 75 Output: covariance matrix for regression models mtSet Description: Cu...ommand line interface; constructs linear prediction models; Best Linear Unbiased Predict...2925 days ago
Worldwide funding agencies to fund your bioinformatics research !!
Are you seeking funding for research or training in a particular area? Check out the...on’s disease. Areas of interest include trinucleotide expansions, animal models, gene therapy, neurobiology a...2954 days ago
2891 days ago
Genome Assembly Tools and Software - PART1 !!
...Rnnotator is an automated software pipeline that generates transcript models by de novo assembly of RNA-Se..., such as HIV-1. TruHmm – TRanscription Unit Assembly by a Hidden Markov model TruHmm is a referenc...2702 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudo...free sequence dissimilarity measures d2* and d2 S under different Markov chain models (using k-words) R packa...2388 days ago