3946 days ago
3945 days ago
Phylogenetic for Bioinformatics
...f organismal lineages as they change through time.Every living organism contains DNA, RNA, and proteins. Closely related organisms generally have a high degree of agreement in the mo...3945 days ago
3918 days ago
Best book Titles for Learning Bionformatics
...Data Analysis Guidebook, Simon R. Swindell (Editor), 1997, Humana Press High Performance Computational Met...k Schena (Editor), 2000, Eaton Pub Expression Genetics: Accelerated and High-Throughput Methods (Biotechni...3916 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...on file Efficient storage of high throughput sequencing data us...C: a quality control tool for high-throughput sequence data. Hom...e for the characterization of high-throughput RNA-sequencing dat...or analysis of microarray and high-throughput sequencing data. I...3778 days ago
List of bioinformatics open source projects/software.
...d Genome Browser http://bioviz.org/igb/ Java-based desktop genome browser Integrative Genomics Viewer (IGV) http://www.broadinstitute.org/igv/ High-performance desktop tool for...3755 days ago
List of In-silico Binding Site Prediction Tools
...r across different species. For example, it can highlight a conserved activation l...om FunFOLD are shown to achieve a significantly higher mean Matthews Correlation C...verlap with the experimentally observed ligand. High prediction rates were again o...3742 days ago
Next generation sequencing in R or bioconductor environment
...s BioC-Seq domain. Its classes and methods provide support for many more high-level packages like GenomicRa...ion factor (TF) binding sites in a large number of enriched regions from high-throughput ChIP-chip or ChIP-...3623 days ago
Commercial and public next-gen-seq (NGS) software
...Supports up to 5 or more bp mismatches/INDELs. Highly tunable. Written by Hui Jia...arry out post-analysis. ZOOM is developed to be highly accurate, flexible, and use...ew method to detect copy number variation using high-throughput sequencing. Chao X...3517 days ago