Results for "Hits"
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...E tool provides a method to view the tissue specific regulatory component of a set of EWAS DMPs. eFORGE analysis takes a set of DMPs, such as those hits above genome-wide significanc...2761 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...of sequences comparisons while providing highest quality results, Contains a fully integrated data filtering engine capable of selecting relevant hits with user-defined criteria (E...2362 days ago
- Synteny Imaging tool (Synima) written in Perl, which uses the graphical features of R. Synima takes orthologues computed from reciprocal best BLAST hits or OrthoMCL, and DAGchainer,...
2353 days ago
Bandage: interactive visualization of de novo genome assemblies
...nodes, adding labels, changing colors and extracting sequences. BLAST searches can be performed within the Bandage graphical user interface and the hits are displayed as highlights i...2359 days ago
“One code to find them all”: a perl tool to conveniently parse RepeatMasker output files
...information from RepeatMasker about transposable elements, retrieve their sequences and get some quantitative information. Assemble RepeatMasker hits into complete TE copies, incl...2177 days ago
Synima: a Synteny imaging tool for annotated genome assemblies
Synima written in Perl, which uses the graphical features of R. Synima takes orthologues computed from reciprocal best BLAST hits or OrthoMCL, and DAGchainer, and outputs an overview...2029 days ago
PyParanoid: a pipeline for rapid identification of homologous gene families in a set of genomes
...s in a set of genomes - a central task of any comparative genomics analysis. The "gold standard" for identifying homologs is to use reciprocal best hits (RBHs) which depends on perfo...1376 days ago
CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R
CRBHits is a coding sequence (CDS) analysis pipeline in R (R Core Team, 2019). It reimplements the Conditional Reciprocal Best Hit (CRBH) algorithm crb-blast and covers...1285 days ago
