poRe: an R package for the visualization and analysis of nanopore sequencing data
Motivation: The Oxford Nanopore MinION device represents a unique sequencing technology. As a mobile sequencing devic...2369 days ago
IONiseR: tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer
This package is intended to provide tools for the quality assessment of data produced by...is task. However, nanopore sequencing is an emerging and rapidly developing technology. It is not clear what will be...2369 days ago
2363 days ago
NanoSim: nanopore sequence read simulator based on statistical characterization.
NanoSim, a fast and scalable read simulator that captures the technology-specific features of ONT data and allows for adjustments upon improvement of nanopore sequencing technology. The first step of NanoSim is...2344 days ago
Ra assembler - a de novo DNA assembler for third generation sequencing data
Integration of the Ra assembler - a de novo DNA assembler for third generation sequenci...oped on Faculty of Electrical Engineering and Computing (FER), Ruder Boskovic Institute (RBI) and Genome Institute...2334 days ago
LRCstats: Long Read Correction Statistics
LRCstats is an open-source pipeline for benchmarking DNA lon...g reads outputted by third generation sequencing technology such as machines produced by...he reads produced by third generation sequencing technology, as the name suggests, are lo...2326 days ago
2175 days ago
LAMSA: fast split read alignment with long approximate matches
LAMSA (Long Approximate Matches-based Split Aligner) is a novel split alignment app...mp; Yan Gao and developed by Yan Gao in Center for Bioinformatics, Harbin Institute of Technology, China.2196 days ago
Hercules: a profile HMM-based hybrid error correction algorithm for long reads
Choosing whether to use second or third generation sequencing platforms can lead to trad...sed alignment techniques and do not take the error profile of the underlying technology into account. Memory- and tim...2099 days ago
CoLoRMap: Correcting Long Reads by Mapping short reads
Second generation sequencing technologies paved the way to an exceptional increase in th...correcting noisy long reads, such as the ones produced by PacBio sequencing technology, using high-quality Illumina...2099 days ago