CLA: Contig-Layout-Authenticator
To improve upon the shortcomings associated with the construction of draft genomes with Illumina paired-end sequencing, we developed Contig-Layout-Authenticator (CLA). Th...2569 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS is a tool able to merge two or more assemblies in order to improve contiguity and correctness. It ca...s hard to select the best tool. In this context we propose a tool that improves assemblies (and, as a by-pro...2555 days ago
DarkHorse: a method for genome-wide prediction of horizontal gene transfer
...itative, reproducible, and computationally undemanding. It can be combined with genomic signature and/or phylogenetic tree-building procedures to improve accuracy and efficiency. The...2521 days ago
Flye: Fast and accurate de novo assembler for single molecule sequencing reads
...ds and does not require them to be error-corrected. After the initial assembly, Flye performs an extra repeat classification and analysis step to improve the structural accuracy of th...2204 days ago
Ranbow: a haplotype assembler for polyploid genomes
...is highly heterozygous. Ranbow can also be applied to other polyploid genomes. After a first phasing, Ranbow utilizes the assembled haplotypes to improve the accuracy of variant calli...2177 days ago
D-GENIES: A tool for Dotplot large Genomes in an Interactive, Efficient and Simple way
...Efficient and Simple way – is an online tool designed to compare two genomes. It supports large genome and you can interact with the dot plot to improve the visualisation. We use...2167 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
P_RNA_scaffolder, a fast and accurate tool using paired-end RNA-sequencing reads to scaffold genomes. This tool aims to improve the completeness of both protein-coding and non-coding...2166 days ago
WhatsHap: fast and accurate read-based phasing
...uo;complex” variants (such as TCG → AGAA) Pedigree phasing mode uses reads from related individuals (such as trios) to improve results and to reduce coverag...2181 days ago
transrate: Understanding your transcriptome assembly
...This allows you to choose between assemblers and parameters, filter out the bad contigs from an assembly, and help decide when to stop trying to improve the assembly....2135 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
...tein-based approaches (for instance, PEP_scaffolder ) for scaffolding genome sequences. The most important feature of this method is to improve the completeness of gene regi...2079 days ago