2070 days ago
BAUM – Improving Genome Assembly by Adaptive Unique Mapping and Local Overlap-Layout-Consensus
...OLC is used to assemble each region in parallel. BAUM can: (1) perform reference-assisted assembly based on the genome of a close species; (2) or improve the results of existing assem...2032 days ago
Purge Haplotigs: Pipeline to help with curating heterozygous diploid genome assemblies
...tigs) or on a phased-diploid assembly (i.e. FALCON-Unzip primary contigs + haplotigs). Here are two examples of how Purge Haplotigs can improve a haploid and diploid assembl...1979 days ago
Genome assembly tutorial "Genome Assembly for short and long reads"
...data How to run a short read assembler on Illumina data How to run a long read assembler on Pacific Biosciences or Oxford Nanopore data How to improve the accuracy of a long read a...1946 days ago
FLAS: fast and high throughput algorithm for PacBio long read self-correction.
FLAS, a wrapper algorithm of MECAT, to achieve high throughput long read self-correction while keeping MECAT's fast speed. FLAS finds additional alignments from MECAT prealigned long reads to improve the correction throughput, and removes misalignments for accuracy.1792 days ago
NextDenovo: string graph-based de novo assembler for TGS long reads
...ar to canu, but requires significantly less computing resources and storages. After assembly, the per-base error rate is about 97-98%, to further improve single base accuracy, please...1595 days ago
Google Colab : Google Colab is a free cloud service and now it supports free GPU!
You can: improve your Python programming language coding skills. develop deep learning applications using popular libraries such as Keras, TensorFlow, PyTorch, and OpenCV...1569 days ago
flexidot: Highly customizable, ambiguity-aware dotplots for visual sequence analyses
FlexiDot is a cross-platform dotplot suite generating high quality self, pairwise and all-against-all visualizations. To improve dotplot suitability for comparison of consensus and er...1485 days ago
ShinyGO v0.61: Gene Ontology Enrichment Analysis + more
2/3/2020: Now published by Bioinformatics. 11/3/2019: V 0.61, Improve graphical visualization (thanks to reviewers). Interactive networks and much more. 5/20/2019: V.0.60, Anno...1445 days ago
RosettaAntibodyDesign (RAbD): A general framework for computational antibody design
...ure, and binding space of an antibody-antigen complex. It can be used for a multitude of project types, from denovo design to redesigns that improve binding affinity, optimize st...1336 days ago