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List of In-silico Binding Site Prediction Tools
...he spatial patterns of protein binding sites including both holo and apo forms from...tein interactions. An assortment of metrics, including changes in solvent accessible...me that can be occupied by probe atoms, i.e. including their radii). PocketPicker:...3760 days ago
Next generation sequencing in R or bioconductor environment
...ure and defines three major data containers - GRanges, GRangesList and GappedAlignments - which are supporting other important BioC-Seq packages including ShortRead, Rsamtools, rtrackl...3641 days ago
Commercial and public next-gen-seq (NGS) software
...e Solexa 1G machine. Exonerate - Various forms of pairwise alignment (including Smith-Waterman-Gotoh) of DNA/...viewer. EagleView can display a dozen different types of information including base quality and flowgram sig...3535 days ago
Apps for Busy Bioinformatics Researchers !!!
...nd learning purposes. Visualize whole human genome sequencing data including small variations, copy number...e 3.0 was released September 27, 2011 with new data from 1209 studies including 25342 time nodes. We will be...3558 days ago
A guide for complete R beginners !
...ibraries have been created to perform application specific tasks. e.g. analysis of microarray experiments and Next-Gen sequencing (bioconductor: including Bioseq group). Presentation...3378 days ago
Software packages for next gen sequence analysis
...Solexa 1G machine. * Exonerate - Various forms of pairwise alignment (including Smith-Waterman-Gotoh) of DNA/...viewer. EagleView can display a dozen different types of information including base quality and flowgram sig...3259 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...S offers many different tools including alignment, RNA-Seq, DNA-Seq,...CR data include: Gene expression including alternative splicing, miRNA e...d Trio analysis, DNA Copy number including allele specific copy number a...and ilink (estimates parameters including recombination fractions, alle...2925 days ago