Web Apollo: a web-based genomic annotation editing platform
Web Apollo is the first instantaneous, collaborative genomic annotation editor availab...One of the natural consequences following from current advances in sequencing technology is that there are more and mo...2485 days ago
poRe: an R package for the visualization and analysis of nanopore sequencing data
Motivation: The Oxford Nanopore MinION device represents a unique sequencing technology. As a mobile sequencing devic...2366 days ago
IONiseR: tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer
This package is intended to provide tools for the quality assessment of data produced...his task. However, nanopore sequencing is an emerging and rapidly developing technology. It is not clear what will be...2366 days ago
2361 days ago
NanoSim: nanopore sequence read simulator based on statistical characterization.
NanoSim, a fast and scalable read simulator that captures the technology-specific features of ONT data and allows for adjustments upon improvement of nanopore sequencing technology. The first step of NanoSim is...2342 days ago
Ra assembler - a de novo DNA assembler for third generation sequencing data
Integration of the Ra assembler - a de novo DNA assembler for third generation sequencing data developed on Faculty of Electrical Engineering and Computing (FER), Ruder Boskovic Institute (RBI) and Genome Institute...2332 days ago
LRCstats: Long Read Correction Statistics
LRCstats is an open-source pipeline for benchmarking DNA l...ng reads outputted by third generation sequencing technology such as machines produced by...The reads produced by third generation sequencing technology, as the name suggests, are lo...2324 days ago
2173 days ago
LAMSA: fast split read alignment with long approximate matches
LAMSA (Long Approximate Matches-based Split Aligner) is a novel split alignment approach with faster speed...Gao and developed by Yan Gao in Center for Bioinformatics, Harbin Institute of Technology, China....2194 days ago
Hercules: a profile HMM-based hybrid error correction algorithm for long reads
Choosing whether to use second or third generation sequencing platforms can lead to tr...ased alignment techniques and do not take the error profile of the underlying technology into account. Memory- and tim...2096 days ago