1048 days ago
Install BLAST in Ubuntu/Linux and Window !
#On ubuntu sudo apt-get install ncbi-blast+ #Ubuntu Conda installation conda install -c bioconda blast #Windows installation First: Download ftp://ftp.ncbi.nlm.nih.g....7.1/ncbi-blast-2.7.1+-win64.exe #Run this installer using the defaults, it shou...1140 days ago
Converting from Windows-style to UNIX-style line endings with dos2unix
...ISK:~/Downloads/abc/bin$ sudo apt install dos2unix [sudo] password for...owing packages were automatically installed and are no longer required:...he following NEW packages will be installed: dos2unix 0 upgraded, 1...4 files and directories currently installed.) Preparing to unpack .../...1170 days ago
Install ATOM editor on Elemantory OS / Ubuntu
...g packages were automatically installed and are no longer required:...g additional packages will be installed: gconf-service gconf-ser...les and directories currently installed.) Preparing to unpack .../...ci, clean, config, dedupe, deinstall, delete, dev, develop, disabl...1169 days ago
2686 days ago
Plot the density of genes in R
...olumn2 = start position of the gene # check if ggplot2 is installed, if so, load it, # if not, install and load it if("ggplot2" %in...installed.packages())){ library(ggplot2) } else { install.packages("ggplot2") libr...2278 days ago
843 days ago
Installing Busco version 4.0.6
(base) jit@jit-HP-Pro-3335-MT: conda install -c bioconda -c conda-forge busco=4.0.6 Collecting package meta...Total: 389.5 MB The following NEW packages will be INSTALLED: _r-mutex co...1446 days ago
2145 days ago
Perl script to convert GFF 2 FASTA !
#!/usr/bin/perl use strict; use warnings; use Bio::Seq; use Bio::SeqIO; use Bio::DB::Fasta; $| = 1; # Flush output my $outfile_cds = Bio::SeqIO->new( -forma...2132 days ago