2945 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a reference genome. Un...mina, Applied Biosystems SOLiD, Roche 454, Ion Torrent and Pacific BioScienc...capture mismatches as well as short insertion...2900 days ago
Genome Assembly Tools and Software - PART2 !!
...nger, 454, Solexa (Illumina), IonTorrent data and PacBio (the l...ng comparative genome information and paired-end reads. DISCOV...2.6.1 – A LASSO Regression Approach to RNA-Seq Based Tra...d-Read Iterative Contig Extension) is a de novo genome assemble...s an assembler of next generation...2679 days ago
Structure of Binary files used for storing sequencing data-bam and sff
Many times bioinformatician needs to parse binary files like bam and sff. Advantage of...hey occupy less space in memory with maximum information content. Link for those who...rge.net/SAMv1.pdf (from page 12) sff file (for Ion...3913 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...eq, Genome Browser, visualizations, Biological Interpretation, etc. Supports workflows &ldq...quencing data produced by the ION PGM™, Roche Junior, Illumin...: command-line program, detection of rare SNVs, relies upon Sam...ag) MultiBLUP Description: Package program, command lin...2902 days ago
Commands to install conda in Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads$ mkdir jittmp jit@jit-HP-Pr...se BSD License: Redistribution and use in source and binary...OFITS; OR BU SINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY TH...n s them. If needed, instructions for removing the cuDNN binar...... installing: sortedcollection...1505 days ago