List of motif discovery tools !
In genetics, a sequence motif is a nucleotide or amino-acid sequence pattern that is widespread and has, or is conjectured to have, a biological significance. For pr...1998 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...notation tools:Prokka - https://github.com/tseemann/prokkaRAST - http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/RapidAnnotationServerJCVI Annotation Service - http://www.jcvi.org/cms/research/projects/ann...1209 days ago
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List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers many different tools including alignment, RNA-Seq, DNA-Seq, ChIP-Seq, Small RNA-Seq, Genome Browser, visualizations, Biologica...2913 days ago
JCVI:Python utility libraries on genome assembly, annotation and comparative genomics
Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics. https://github.com/tanghaibao/jcvi More at https://github.com/tanghaibao/jcvi/wikiTags: JCVI, Python, utility, libraries, genome, assembly, annotation, comparative, genomics, synteny, plots
1515 days ago
Tags: MCscan, pipeline, synteny, plant, annotation, comparative genomics, jcvi
1097 days ago
Comment on "collinearity: scripts to parse and analyse MCScanX collinearity output"
This python script is by far the best for MCscan https://github.com/tanghaibao/jcvi/wiki/MCscan-(Python-version)1514 days ago