Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...iles of the RNA-seq paired-end reads Software (Java) https://github.com/ChimeRSc...ionality reduction technique MinHash Software (Java) https://github.com/marbl/MH...y–Curtis dissimilarity measure Software (Java) https://github.com/ctlab/me...2370 days ago
List of visualization tools for genome alignments
...nalysis and interpretation of results: ABySS Explorer Interactive Java application that uses a novel...nomic sequences http://bioapp.psych.uic.edu/DNannotator.htm JVM Java Visual Mapping tool for NGS r...2283 days ago
Python learning resources for bioinformatics and computational biologist !
...2.x) The Coder's Apprentice: Learning Programming with Python 3 - Pieter Spronck (PDF) (3.x) The Definitive Guide to Jython, Python for the Java Platform - Josh Juneau,...2254 days ago
Convert VCF to tab-deilimited table
Performed with GATK : java -Xmx8g -jar GenomeAnalysisTK.jar \ -T VariantsToTable \ -R reference.fa \ -V reference_genomes_GT.vcf \ -F CHROM -F POS -F REF -F ALT -GF GT...2181 days ago