Converting BLAST output into CSV
Suppose we wanted to do something with all this BLAST output. Generally, that’s the case - you want to retrieve all matches, or do a reciprocal BLAST, or something...2347 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED database an...that is capable of processing a larger data volu...ssigns K numbers to the user's sequence data by BLAST...irtual machine and supported by updated database...2341 days ago
Bioinformatics Web Application Development with Perl
Perl's second wave of adoption came from the growth of the world w...venerable DBI module has been the focal point of database acces...allows it to provide the same interface to huge relational database...2331 days ago
List of visualization tools for network biology
Network analysis is any structured tech...ks http://www.arena3d.org Biana Data...integrated multi-level analysis of microarray, sequence, regulatory and other data htt...rsat.ulb.ac.be/neat/ Ondex Data integrati...grams manually and import external data ht...2298 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for...r improving analysis protocols, testing data qualit...a sequence assembly and associated metadata htt...tures, next-generation sequencing (NGS) data and the r...agement and visualization of sequencing data ht...2293 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
The purpose of this cheat sheet is to introduce biologist and bioinformatician to the frequently u...le in real system locate file — find all instances of file using indexed database...2290 days ago
Awk for Bioinformatician and computational biologist
Awk is a programming language which allows easy manipulation of structured data...elimited by semicolon.Say you have data.tsv wi...e from the file. $ awk '{print;}' data/test...int $1","$2;}END{print "-------"}' data/test.tsvH...g5 ACTTTATATATT You can also store data in...2289 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on genome se...p://tlife.fudan.edu.cn/ltr_finder/ LTR_STRUC http://www.genetics.uga.edu/retrolab/data/LTR...2284 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS...and visualization of RNA-Seq data. This...supports large scale RNA-Seq data analysis too. The tool also suppor...and leaves more time for end data interpretation. This webinar will...s over 11 years experience in molecular biol...ng. Dr. Suman holds a Ph.D in Molecula...2274 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can b..., Python is great for backend web development, data anal...eCademy Python Composing Programs (3.x) Data Structure...ner (PDF) Problem Solving with Algorithms and Data Str...2265 days ago