Results for "Javascript; Database: MySQL; Microarray data Analysis; Comparative Genomics; NGS; Proteomics; Molecular Phylogenetics; Teaching"
Bio-Scripts
Perl script to find palindromic regions in DNA sequences
use strict; use warnings; my $pp = qr/(?: (\w) (?1) \g{-1} | \w? )/ix; my $filename = $ARGV[0]; open(my $fh, '2163 days ago
Perl script to check fastq reads qualities !
#!/usr/bin/env perl use strict; use warnings; sub readfq { my ($fh, $aux) = @_; @$aux = [undef, 0]...$qlen), "\n"; __END__ my @aux = undef; # this is for keeping intermediate data...2163 days ago
Installing Busco version 4.0.6
(base) jit@jit-HP-Pro-3335-MT: conda install -c bi...nda-forge busco=4.0.6 Collecting package metadata (repodata.json...64::perl-cpan-meta-yaml-0.018-pl526_0 perl-data-dumper...ule-metad~ bioconda/linux-64::perl-module-metadata-1.0...1462 days ago
- ➜ Tools git:(master) ✗ git clone git://github.com/bcgsc/bloomfilter...nstall-exec-am'. make[2]: Nothing to be done for 'install-data-am'. mak...nstall-exec-am'. make[2]: Nothing to be done for 'install-data-am'...
2160 days ago
Biological Sequence handling with Perl !
package Sequence::Generic; # File: Sequence/Generic.pm use stric...eration } else { croak "Doesn't look like sequence data" unless $sequence=~/^[gactnu\s]+$/i; $self->{'data'} =...2190 days ago
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the reference multifasta file name here...2149 days ago
- ➜ bin git:(master) ✗ ./fastq-dump --help Usage: ./f...Read Splitting Sequence data may...Filter used in early 1000 Genomes data: no...Output to stdout, all split data bec...
2135 days ago
Install Parrot Virtual Machine !
#Parrot is a virtual machine designed to efficiently compile and execute bytecode for dynamic lang...s and other build files...........done. gen::config_pm - Record configuration data for...1546 days ago
- ➜ BorisTrinityAssembly /home/urbe/Tools/transrate-1.0.3-linux-x86_64/transrate _...ing read diagnostics [ INFO] 2018-07-13 14:54:34 : No reference provided, skipping comparat...
2132 days ago
- # list sample names & download URLs. sample_links = {"ERR458493": "...w SAMPLES=sample_links.keys() # download yeast rna-seq data from Schu...rule download_all: input: expand("rnaseq/raw_data/{sa...
1525 days ago
