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Recovery of complete genomes from metagenomes
This project contains scripts and tutorials on how to assemble individual microbial... Kåre L. Nielsen and Per .H. Nielsen Nature Biotechnology 2013, doi: 10.1038/nbt.25792335 days ago
ECTOOLS: Long Read Correction and other Correction tools
Long Read Correction and other Correction tools This package is a loose collection...ormation for the algorithm can be found:http://schatzlab.cshl.edu/presentations/2013-06-18.PBUserMeeting.pdf2326 days ago
MITObim - mitochondrial baiting and iterative mapping
This document contains instructions on how to use the MITObim pipeline described in Hahn et al. 2013. The full article can be foun...2203 days ago
Cerulean: A hybrid assembly using high throughput short and long reads
Cerulean extends contigs assembled using short read datasets like Illumina paired-e...od is fully described in Deshpande, V., Fung, E. D., Pham, S., & Bafna, V. (2013). Cerulean: A hybrid assembly...2175 days ago
LACHESIS: Genome Assembly with Hi-C-based Contact Probability Maps (LACHESIS)
LACHESIS is method that exploits contact probability map data (e.g. from Hi-C) for...vo genome assemblies based on chromatin interactions. Nature Biotechnology 2013 Dec;31(12):1119-25. doi: ...2197 days ago
EXCAVATOR: detecting copy number variants from whole-exome sequencing data
EXCAVATOR, for the detection of copy number variants (CNVs) from whole-exome sequen...g data.EXCAVATOR has been published on Genome Biology (http://genomebiology.com/2013/14/10/R120/abstract).1962 days ago