Results for "Lateral gene transfer PLOS"
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RATT is software to transfer annotation from a reference (annotated) genome...y genome. It was first developed to transfer annotations between different...embly versions. However, it can also transfer annotations between strains a...almonella serotypes. RATT is able to tran...3009 days ago
- This is a collection of libraries and high-quality end-user scripts for bioinformatic analysis, including working with gene ann...ovide a unified, abstracted interface to multiple common gene...
2997 days ago
Ensembl comparative genomics resources
The Ensembl comparative genomics resources are one such reference set that faci...scores and constrained elements are obtained. Gene alignments are used to define Ensembl Protein Families, GeneTree...nteny displays, collapsible gene tree plots, a gene...2988 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew University of Jerus...transcriptional complexity at at a given gene or locus, and then processes...apart transcripts derived from paralogous genes. B...ranscripts that corresponds to paralogous gene...2965 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowledge which is impor...om public sources) Checking sequence quality, trimming, general...r RNA-Seq) Microarray Basic analysis of Affymetrix Gene...2931 days ago
- AccNET is a Perl application that presents a new way to study the accessory genome of...on network analysis platforms. AccNET collects phylogenetic and functional information...rganization through elements acquired by horizontal gene tran...
2767 days ago
- High-throughput genomics has revolutionized biological research, however,...antitative assessment of genome assembly, gene set, and transcriptome comple...n evolutionarily informed expectations of gene con...genomics studies, and the annotated BUSCO gene...
2916 days ago
- A free extensible and customizable gene annotation portal, a complete resource for learning about gene and protein function. http://biogps.org/#goto=welcome
2904 days ago
- statistical analysis and visulization of functional profiles for genes and gene clustersBioconductor version: Release (3.3)This...d visualize functional profiles (GO and KEGG) of gene and...R package for comparing biological themes among gene...
2879 days ago
- DarkHorse is a bioinformatic method for rapid, automated id...sely proportional to the phylogenetic distance between database...p;predictions of horizontally transferred proteins, but can also ser...test for potential horizontal transfer candidates identified by alte...portunity to explore the phylogene...
2874 days ago
