2362 days ago
phyloXML: XML for evolutionary biology and comparative genomics
phyloXML (example) is an XML language designed to describe phylogenetic trees (or networks) and associated data. Phy...vides elements for commonly used features, such as taxonomic information, gene...2362 days ago
PASA: Gene Structure Annotation and Analysis
PASA, acronym for Program to Assemble Spliced Alignments, is a eukaryotic genome annotation tool that expl...ced alignments of expressed transcript sequences to automatically model gene structures, and to maintain gene...2334 days ago
Recovery of complete genomes from metagenomes
This project contains scripts and tutorials on how to assemble individual microbial genomes fro...tiple metagenomes Mads Albertsen, Philip Hugenholtz, Adam Skarshewski, Gene...2334 days ago
HGT-Finder: A New Tool for Horizontal Gene Transfer Finding and Application to Aspergillus genomes
HGT-Finder: (i) can be used for HGT detection in both prokaryotes and eukaryotes, (ii) can report a statistical P value for each gene to indicate how likely it is to be horizontally tran...2313 days ago
Alien_Hunter : prediction of putative Horizontal Gene Transfer (HGT) events
Alien_hunter is an application for the prediction of putative Horizontal Gene Transfer (HGT) events with the implementation of Interpolated Variable Order Motifs (IVOMs). An IVOM approach ex...2323 days ago
2311 days ago
PGAP-X: Extension on pan-genome analysis pipeline
PGAP-X is a microbial comparative genomic analysis platform with graphic interface. Serials...d to analyze and visualize genomics structure variation, gene distribution with different conservative levels, and gene...2307 days ago
HTTDB - Horizontally transferred transposable elements database
Transposons or Transposable elements (TEs) are "mobile genes" capable of mobilization from one ge...is called Horizontal Transposons Transfer. HTT was first discovered by...ng a P element that was transferred from Drosophila willi...abase to include Horizontal-Virus Tran...2307 days ago
MGcV: the microbial genomic context viewer for comparative genome analysis
MGcV is an interactive web-based visalization tool tailored to facilitate small scale...enome analysis. To start using MGcV: Supply your genes/genomic segments/phylogenetic...entifiers (one per line) or by using the gene...2301 days ago