Results for "Length"
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...om genome-wide ChIP data. Narlikar, Nucleic Acids Res 41:21–32, 2013 PubMed Transcriptome analysis Assembly and comparison to genome Full-length transcriptome assembly from R...3791 days ago
Perl one-liner for bioinformatician !!!
...t blank linesperl -pe '$_.="\n"x7' #7 space in a line.perl -ne 'print unless /^$/' #remove all blank linesperl -lne 'print if length($_) < 20' #print all lines with length less than 20.perl -00 -pe ''...3640 days ago
Next generation sequencing in R or bioconductor environment
...ions bound by transcription factors. PICS identifies enriched regions by modeling local concentrations of directional reads, and uses DNA fragment length prior information to discrimi...3637 days ago
Commercial and public next-gen-seq (NGS) software
...test versions available as part of the Vancouver Short Read Analysis Package MACS - Model-based Analysis for ChIP-Seq. MACS empirically models the length of the sequenced ChIP fragmen...3531 days ago
Software packages for next gen sequence analysis
...st versions available as part of the Vancouver Short Read Analysis Package * MACS - Model-based Analysis for ChIP-Seq. MACS empirically models the length of the sequenced ChIP fragmen...3254 days ago
- ...(either or both ends) Quality filtering Fixed-length trimming Generation of histog...f reads or bases) Changing fasta line-wrapping length Reverse-complementing (all re...x2g". For example, to change the line-wrapping length on the human genome (which ha...
2726 days ago
- ...ters. For details on translating between Phred scores and ASCII values, refer to Table 1 of this useful blog post from Damian Gregory Allis. read-length: the number of base pairs tha...
2881 days ago
Genome Assembly Tools and Software - PART1 !!
...l encompaasing error rate, insert length and other features of indvidu...hly accurate and reconstruct full-length genes when transcripts are se...merGenie estimates the best k-mer length for genome de novo assembly....nt rate heterogeneity and a novel length-dependent model of gap format...2698 days ago
Perl Special Vars Quick Reference
...rator. (Use a real multidimensional array instead.) Formats $% Page number for currently selected output channel. $= Current page length. $- Number of lines lef...2656 days ago
Edit distance application in bioinformatics !
...insertion and deletion, not substitution; the Hamming distance allows only substitution, hence, it only applies to strings of the same length. the Jaro distance ...2353 days ago
