BIMA V3: an aligner customized for mate pair library sequencing
Summary: Mate pair library sequencing is an effective and economical method for detecting genomic st...cess for most NGS alignment programs. Large insert sizes, introduction of library preparation protocol artifact...2692 days ago
2601 days ago
2554 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
...lies in order to improve contiguity and correctness. It can be used on all NGS-based assembly projects and it shows its full potential with multi-library Illumina-based projects. With...2537 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
...community diversity. Grinder may also be used to help decide between alternative sequencing methods for a sequence-based project, e.g. should the library be paired-end or not, how man...2532 days ago
2506 days ago
2499 days ago
LIBSVM -- A Library for Support Vector Machines
LIBSVM is an integrated software for support vector classification, (C-SVC, nu-SVC), regression (epsilon-SVR, nu-SVR) and distribution estimation (one-cl...2462 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outpu...2345 days ago
2332 days ago