CAMSA :: a tool for Comparative Analysis and Merging of Scaffold Assemblies
...nbsp;Comparative Analysis and Merging of Scaffold Assemblies, distributed both as a standalone software package and as Python library under the MIT license. Main...2313 days ago
mojolicious: a next generation web framework for the Perl programming language.
Back in the early days of the web, many people learned Perl because of a wonderful Perl library called CGI. It was simple enough to get started without knowing much about the lan...2298 days ago
2291 days ago
GenomeTools: The versatile open source genome analysis software
...collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt. It is based on a C library named “libgenometools&r...2272 days ago
circosJS: d3 library to build circular graphs
Circos is a javascript library to easily build interactive graphs in a circular layout. It's based on d3.js. It aims to be a javascript version of the Circos software. You should consider using Circos to show: relationships between entities periodical data2267 days ago
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
ETE v3, featuring numerous improvements in the underlying library of methods, and providing a novel set of standalone tools to perform common tasks in comparative genomics and phyloge...2261 days ago
DendroPy: a Python library for phylogenetic computing
DendroPy is a Python library for phylogenetic computing. It provides classes and funct...f the libary. DendroPy can thus function as a stand-alone library for phylogenetics, a component of more complex multi-library phyloinformatic pipelines, or...2198 days ago
“One code to find them all”: a perl tool to conveniently parse RepeatMasker output files
...coverage...) Ambiguous cases such as nested TE can be assembled into copies automatically or manually Allow for working with a TE user-defined library Allow for working with only...2156 days ago
D-GENIES: A tool for Dotplot large Genomes in an Interactive, Efficient and Simple way
...ation. We use minimap version 2 to align the two genomes. Then, the PAF file is parsed and plotted into an interactive plot written with d3.js library. D-Genies also allows to d...2148 days ago
Bokeh: An interactive visualization library that targets modern web browsers for presentation
Bokeh is an interactive visualization library that targets modern web browsers for presentation. Its goal is...ide. If you are interested in contributing to Bokeh, or extending the library, see the Developer Guide...2088 days ago