Results for "Linux"
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Linux for bioinformatician !!!
Linux, free operating system for computers, provides several powerful admin tools and utilities which will help you to manage your systems effectively and handle huge amount of genomic/biological data with an ease. The field of bioinformatics relies heavily on Linux-based computers and software. ...Tags: Bioinformatics, Computational Biology, Linux, Tools, Commands, Command lines
3702 days ago
- Linux Commands Cheat Sheet File System ls — list items in current directory ls -l — list items in current directory and show in long format to see perimissions, size, an modification date ls -a — list all it...
Tags: Bioinformatics, Cheatsheet, Linux
2871 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
The purpose of this cheat sheet is to introduce biologist and bioinformatician to the frequently used tools for NGS analysis as well as giving experience in writing one-liners. File System ls — list items in current directory ls -l — list items in current directory and sh...Tags: Linux, Commands, Cheat, Sheet, Bioinformatics, Computational, Biology, Professionals
2277 days ago
Creating conda environment for python2.7
TIP: By default, environments are installed into the envs directory in your conda directory. Run conda create --help for information on specifying a different path. Use the Terminal or an Anaconda Prompt for the following steps. To create an environment: c...Tags: Creat, conda, environment, python2.7, python, Linux
2187 days ago
- Subprocess is one of simplest way of running linux command from within python code Example: if you want to run fastqc for QC of fastq file: from subprocess import Popen,PIPE,call p=Popen(["fastqc","-f","fastq","-o", "/home/name/result/","/dev/stdin"],stdin=fopen("read.fastq","r") ,stdout=PIPE...
Tags: python, linux, PIPE
3546 days ago
- It's been a while since I last installed BLAT and when I went to the download directory at UCSC: http://users.soe.ucsc.edu/~kent/src/ I found that the latest blast is now version 35 and that the code to download was: blatSrc35.zip. However, you can also get pre-compiled binaries at...
Tags: blat, install, linux, alignment
2060 days ago
