Results for "Linux"
Bio-Scripts
Perl script to count the number of Adenine, Thymine, Guanine and Cytosine in your DNA Sequence
...e file is not available in the same directory of this script, enter the name of the file along with the path. In windows: c:\dnafile.txt, In Linux: /home/user/sequence/dnafile....2919 days ago
Palindrome Simulation commands !
...terleavedPE.fasta 3326 cd masurca; ~/Tools/MaSuRCA-3.2.3/bin/masurca sim.conf 3327 ./assemble.sh 3328 cd .. 3329 ~/Tools/SPAdes-3.10.1-Linux/bin/spades.py --careful -1 pa...1739 days ago
Installing Busco version 4.0.6
...MB conda-forge binutils_linux-64-2.34 | hc952b39_1...onda-forge gfortran_impl_linux-64-7.3.0| hdf63c60_5...augustus bioconda/linux-64::augustus-3.2.3-pl526hcfae...perl-locale-maket~ bioconda/linux-64::perl-locale-maketext-simp...1456 days ago
- ...hecking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system t...hecking build system type... x86_64-pc-linux-gnu checking host system typ...hecking build system type... x86_64-pc-linux-gnu checking host system typ...
2154 days ago
Long reads mapper bash script !
.../urbe/anaconda3/bin/samtools graphMapLoc=/home/urbe/Tools/graphmap/bin/Linux-x64/graphmap minimap2Loc=/home/urbe/Tools/minimap2-2.3_x64-linux/minimap2 bwaMemLoc=/home/urb...2126 days ago
- ➜ BorisTrinityAssembly /home/urbe/Tools/transrate-1.0.3-linux-x86_64/transrate _...explanations ➜ BorisTrinityAssembly /home/urbe/Tools/transrate-1.0.3-linux-x86_64/transrate --assembly=T...
2126 days ago
Install Python locally on shared Linux server !
#Install python to local directory #Firstly, I create a folder in my home directory, download the python source and extract it mkdir ~/python cd ~/python w...2101 days ago
Installing pb-assembly on Linux !
...oto/1.0.7-foss-2016a util-linux/2.31-GCCcore-6.4.0 lapack/gc...ecifications: PackageNotFoundError: Dependencies missing in current linux-64 channels: - pb-assembl...2037 days ago
Installing Platypus on Ubuntu !
...2a7953cd4c878c0996/Cython-0.29-cp27-cp27mu-manylinux1_x86_64.whl (2.0MB) 100%...hon2.7 -c cython/htslibWrapper.c -o build/temp.linux-x86_64-2.7/cython/htslibWrapp...thon2.7 -c tabix/bgzip.c.pysam.c -o build/temp.linux-x86_64-2.7/tabix/bgzip.c.pysa...2022 days ago
- ...ownload latest BLAST version wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ncbi-blast-2.8.1+-x64-linux.tar.gz # decompress tar -zxvf ncbi-blast-2.8.1+-x64-linux.tar.gz # add BLAST locatio...
1765 days ago
