Perl script to count the number of Adenine, Thymine, Guanine and Cytosine in your DNA Sequence
#!/usr/local/bin/perl -w # While executing this script it asks for the file name of the DNA sequence. If the s...he name of the file along with the path. In windows: c:\dnafile.txt, In Linux: /ho...2920 days ago
Palindrome Simulation commands !
(base) ➜ palindromeAssemblySim more allCommands 3315 mutate.sh in= mutant15CH101.fasta out=mutant153CH101.fa...ca sim.conf 3327 ./assemble.sh 3328 cd .. 3329 ~/Tools/SPAdes-3.10.1-Linux/bin/...1739 days ago
Installing Busco version 4.0.6
(base) jit@jit-HP-Pro-3335-MT: conda install -c bioconda -c conda...MB conda-forge binutils_linux-64-2.34 | hc952b39_1...onda-forge gfortran_impl_linux-64-7.3.0| hdf63c60_5...augustus bioconda/linux-64::augustus-3.2.3-pl526hcfae...perl-locale-maket~ bioconda/linux-64::...1457 days ago
2155 days ago
Long reads mapper bash script !
#!/bin/bash #only for LONG READS mapping #USAGE: runMapper.sh minimap2 ref.fa rea...amtools graphMapLoc=/home/urbe/Tools/graphmap/bin/Linux-x64/graphmap minimap2Loc=/home/urbe/Tools/minimap2-2.3_x64-linux/mini...2126 days ago
2127 days ago
Install Python locally on shared Linux server !
#Install python to local directory #Firstly, I create a folder in my home directory, download the python source and extract it mkdir ~/python cd ~/python wget...2102 days ago
Installing pb-assembly on Linux !
[jnarayan@hmem00 ~]$ module avail ------------------------------------------------...util-linux/2.31-GCCcore-6.4.0 lapack/gc...kageNotFoundError: Dependencies missing in current linux-64 c...2038 days ago
Installing Platypus on Ubuntu !
(py27) ➜ Tools git:(master) ✗ git clone https://github.com/andyrimmer/Pl...c878c0996/Cython-0.29-cp27-cp27mu-manylinux1_x86_64.whl (2.0MB) 100%...cython/htslibWrapper.c -o build/temp.linux-x86_64-2.7/cython/htslibWrapp...c tabix/bgzip.c.pysam.c -o build/temp.linux-x86_...2023 days ago
1765 days ago