Results for "Linux Server"
Bio-Scripts
Perl script to count the number of Adenine, Thymine, Guanine and Cytosine in your DNA Sequence
#!/usr/local/bin/perl -w # While executing this script it asks for the file name of the DNA sequence. If the se...the name of the file along with the path. In windows: c:\dnafile.txt, In Linux:...2915 days ago
- #!/usr/bin/env perl use strict; use warnings; use LWP::Simple; use XML::XPath;...os - ($size/2); my $end = $pos + ($size/2); # Figure out URL for the DAS server. Example: # http://genome.uc...
2909 days ago
Palindrome Simulation commands !
(base) ➜ palindromeAssemblySim more allCommands 3315 mutate.sh in= mutant15CH101.fasta out=mutant153CH101.fas...rca sim.conf 3327 ./assemble.sh 3328 cd .. 3329 ~/Tools/SPAdes-3.10.1-Linux/...1734 days ago
Installing Busco version 4.0.6
(base) jit@jit-HP-Pro-3335-MT: conda install -c bioconda -c conda...MB conda-forge binutils_linux-64-2.34 | hc952b39_1...onda-forge gfortran_impl_linux-64-7.3.0| hdf63c60_5...augustus bioconda/linux-64::augustus-3.2.3-pl526hcfae...perl-locale-maket~ bioconda/linux-...1452 days ago
- ➜ Tools git:(master) ✗ git clone git://github.com/bcgsc/bloomfilte...build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system t...build system type... x86_64-pc-linux-gnu checking host system typ...build system type... x86_64-pc-linux-...
2150 days ago
Long reads mapper bash script !
#!/bin/bash #only for LONG READS mapping #USAGE: runMapper.sh minimap2 ref.fa read...samtools graphMapLoc=/home/urbe/Tools/graphmap/bin/Linux-x64/graphmap minimap2Loc=/home/urbe/Tools/minimap2-2.3_x64-linux/...2121 days ago
- ➜ BorisTrinityAssembly /home/urbe/Tools/transrate-1.0.3-linux-x86_64/transrate _ _...h explanations ➜ BorisTrinityAssembly /home/urbe/Tools/transrate-1.0.3-linux-...
2122 days ago
Install Python locally on shared Linux server !
#Install python to local directory #Firstly, I create a folder in my home directory, download the python source and extract it mkdir ~/python cd ~/python wg...2097 days ago
- jitendra@jitendra-UNLOCK-INSTALL[SNP] wget https://github.com/broadinstitute/gatk/re.../OSDisk/SNP/gatk-4.0.2.1/gatk-package-4.0.2.1-local.jar --help OpenJDK 64-Bit Server VM warning: Insufficient spac...
2074 days ago
Installing pb-assembly on Linux !
[jnarayan@hmem00 ~]$ module avail -------------------------------------------------...util-linux/2.31-GCCcore-6.4.0 lapack/gc...ckageNotFoundError: Dependencies missing in current linux-...2033 days ago
