2868 days ago
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
...serves as command line tool for clustering the list of genes given by the users b..., KEGG, REACTOME and NCG 4.0). It requires gene list in the form of Entrez Gene ID...of tools, as you know you can run multiple gene list simultaneously. ----...2866 days ago
Genome Assembly Tools and Software - PART1 !!
...existing data structure for this usage can be predominantly classified into two categories: string-based model and graph-based model. We therefore list many genomle assembly tools h...2680 days ago
Source Code and Pseudo Code !!
...ing (number and type), and the type of the data it returns. All of these listed items are to be on separate.......... (indented like this) ....... Calls: Start listing functions "this" function...2653 days ago
Perl Special Vars Quick Reference
...rrently selected handle. $, Output field separator (lists) $\ Output record separator. $" Output list separator. (interpolated list...V Name of current file when reading <> @ARGV List of command line args. AR...2638 days ago
Awesome perl frameworks, libraries and software - PART 1
...to get help, use https://lists.sourceforge.net/lists/listinfo/rsnapshot-discuss)...awesome-perl - A curated list of awesome Perl frameworks an...sseur/Perl_Companies - A list of companies which use Perl....ices by sending triggers to a list of hosts perl5-dbi/DBD-mysql...2483 days ago
2483 days ago
2345 days ago
Converting BLAST output into CSV
...the script blast/blast-to-csv.py using Python: python /root/ngs-scripts/blast/blast-to-csv.py out.txt This outputs a spread-sheet like list of names and e-values. To sav...2331 days ago
Run miniasm assembler on nanopore reads !
...ONT.paf awk '{if($1==$6){print}}' AONT.paf > AONTself.paf awk '$5=="-"' AONTself.paf | awk '{print $1}'| sort|uniq > invertedrepeat.list Generated a few palindrome...2324 days ago