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• • BioJoker@biojoker

  

  List all the bash command related to time $ apropos time #bash #time #list

  Tags: bash, time, list

  1927 days ago

• • Jit@jit.aber

  

  Bioconda packages for bioinformatician https://conda-static.anaconda.org/bioconda/ #conda #bioconda #packages #list #tools

  Tags: conda, bioconda, packages, list, tools

  1923 days ago

• • Jit@jit.aber

  

  genomics public data links !

  List of publically available databases on google server. More at https://software.broadinstitute.org/gatk/download/bundle ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/VCF/GATK/. ftp://ftp.broadinstitute.org/bundle/hg38/hg38bundle/

  Tags: google, server, list, database, ngs, cloud, public, genomics

  1537 days ago

• • Rahul Nayak@rahul

  

  Extract the underscore separated values. $ awk '{split($0,a,"_"); print a[1]"_"a[2]}' aaa.txt | sort | uniq -u > all_ids_sm.txt #awk #bash #underscore #list

  Tags: awk, bash, underscore, list

  1485 days ago

• • Rahul Nayak@rahul

  

  Ancient whole genome duplication (WGD) detection tools !

  There are two methods for ancient WGD detection, one is collinearity analysis, and the other is based on the Ks distribution map. Among them, Ks is defined as the average number of synonymous substitutions at each synonymous site, and there is also a Ka corresponding to it, which refers to the av...

  Tags: wgd, duplication, whole, genome, plan, tools, software, synteny, list

  1149 days ago

• • Neelam Jha@neelam

  

  Frequently used bioinformatics tools for viral genome analysis !

  IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Goulder P, Nastouli E, Keane JA, Kellam P, Otto TD. Bioinformatics. 2015 Jul 15;31(14):2374-6. doi: 10.1093/bioinformatics/btv120. Epub 2015 Feb 28. Adapter sequences: Optimal enzymes for amplifying s...

  Tags: bioinformatics, virus, tools, list

  1041 days ago

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