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LoFreq*: A sequence-quality aware, ultra-sensitive variant caller for NGS data
LoFreq* (i.e. LoFreq version 2) is a fast and sensitive variant-calle...nly used for filtering. https://github.com/CSB5/lofreq http://csb5.github.io/lofreq/installation/ https://github.com/CSB5/lofreq/tree/master/dist1550 days ago
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List of Bioinformatics Software Tools for Next Generation Sequencing
...typing for selected loci in bacterial genome, written in Python and C Input: FASTQ reference genome or de novo assembly not needed Output: LoFreq Description: SNV caller, P...2920 days ago
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Bio-Scripts
- (py36) [wsu29@bladeamd-2 lofreq]$ lsb_release -a LSB Version: :base-4.0-amd64:base-4.0-noarch:core-4.0-amd64:core-4.0-noarch:graphics-4.0-amd64:graphics-4.0-noarch:printing-4.0-amd64:printing-4.0-noarch Distributor ID: CentOS Description: CentOS release 6.7 (Final) Release: 6.7 Codename: Final
1550 days ago
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LoFreq*: A sequence-quality aware, ultra-sensitive variant caller for NGS data
LoFreq* (i.e. LoFreq version 2) is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It makes full use of base-call qualities and other sources of errors inherent in sequencing (e.g. mapping or base/indel alignment uncertainty), which are usua...Tags: LoFreq, sequence, quality, aware, ultra-sensitive, variant, caller, NGS, data
1550 days ago
