2816 days ago
2800 days ago
OPERA : Optimal Paired-End Read Assembler
...t since the original publication, we have made significant changes to OPERA (v1.0 onwards) including refinements to its basic algorithm (to reduce local errors, improve efficiency et...2792 days ago
2712 days ago
CISA: Contig Integrator for Sequence Assembly
...blers and the hybrid assemblies merged by existing tools. This tool is implemented in Python and requires MUMmer and BLAST+ to be installed on the local machine. The source code of C...2695 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
...in a weightedgraph. The merging phase is carried out with the help of this weighted graph that allows an optimal resolution of local problematic regions.2691 days ago
2687 days ago
Laj: viewing and manipulating the output from pairwise alignment programs
...ritten in Java in order to provide a graphical user interface that is portable across a variety of computer platforms; indeed its name stands for "Local Alignments with Java". Curren...2619 days ago
Perlbrew: admin-free perl installation management tool.
...::perlbrew perlbrew init If it is installed with cpan, the perlbrew executable should be installed as /usr/bin/perlbrew or /usr/local/bin/perlbrew. For all users w...2486 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full local" alignment strategy that ensures a recapitulation of evolutionary sequence rearrangeme...2478 days ago