AVID: A Global Alignment Program
A new global alignment method called AVID. The method is designed to be fast, memory efficient, and practical for sequence alignments of large genomic regions up to megabases long...2535 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/...l as how to reach the experimental implementation can be found here: doc/rnaseq.md.2521 days ago
2509 days ago
RNAcon: web-server for the prediction and classification of non-coding RNAs
RNAcon is a web-server for the prediction and classification of non-coding RNAs. It uses SVM-based model for...discrimination between coding and ncRNAs and RandomForest-based predic...) Prediction and classification of ncRNAs using structural informationB...2481 days ago
Unicycler: Hybrid assembly pipeline for bacterial genomes
Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only...nctions as a SPAdes-optimiser. It can also assembly long-read-...le assemblies, give it both Illumina reads and long...2365 days ago
TULIP - The Uncorrected Long read Itegration Pipeline
#Running TULIP (The Uncorrected Long-read Integration Process), version 0.4 late 2016 (Europ...llow. Tulipseed takes as input alignments files of long reads...outputs a graph and scaffold structures. Tulipbulb adds long...2352 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (ty...age bacterial genomes, it is possible to generate long conti...as MHAP and DALIGNER. Coupled with long...2348 days ago
Opera: An optimal genome scaffolding program
Opera (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wikipedia.org/wiki/Sequence_assembly ). It uses information from paired-end or long...2348 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
Monitoring the progress of DNA molecules through a membrane pore has bee...ages were incapable of assembling the long read lengths (5-50kbp) at suc...e. Furthermore, the assembly with the long nanop...correctly assembles gene cassettes, rRNAs, transposable elements, and o...2346 days ago
2346 days ago