Results for "Long non-coding RNAs"
Bio-Scripts
Install Parrot Virtual Machine !
#Parrot is a virtual machine designed to efficiently compile and execute bytecode for dynam.... do "lib/Parrot/Config/Generated.pm" failed, '.' is no longer in..................yes, C99. auto::mathl - Test for long...1540 days ago
Long reads mapper bash script !
#!/bin/bash #only for LONG READS mapping #USAGE: runMapper.sh...This is a bash scrip to map your long reads and make it visualizati...epted toolName=$1 refFasta=$2 longReads=$3 thread=$4 readsType...ta $bwaMemLoc mem $refFasta $longReads...rLoc -t $thread -r $refFasta -q $long...2125 days ago
- ➜ Tools git:(master) ✗ git clone https://github.com/Nextomics/nextsv.git Cloning into 'nextsv'... remote: Cou.../src/realign/SWCPU.cpp:30:71: warning: format ‘%llu’ expects argument of type ‘long long...
2101 days ago
Perl script to count occurrence of a character !
#!/usr/bin/env perl # -*- coding: utf-8 -*- #!/usr/bin/perl use strict; use warnings; my %count_of; while ( ) { my @val = split "\t", $_; #my (...1903 days ago
- Map them agaist reference avaga genome using following codes git clone https://github.com/lh3/bwa.git cd bwa; make bwa index ref.fa bwa mem -x pacbio ref.fa pacbio.fq > aln.sam bwa mem -x ont2d ref.fa ont-2D.fq > aln.sam
1728 days ago
Installing ggplot2 and its dependencies on Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads/MitoHunter/minidot/bin$ sudo R [sudo] password for jit:...sor... gcc -std=gnu99 -E checking for grep that handles long lines...g... yes checking whether the C++ compiler supports the long...1553 days ago
Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executable ./web jit@jit-HP-Pro-3335-MT:~/Downloads/aut...d... Evaluation of genome assembly software based on long reads...9 days ago Evaluationgenomeassemblysoftwarelong...1514 days ago
- (JitMetaENV) ➜ assembly conda install -c bioconda prokka Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen s...
1218 days ago
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
use strict; use warnings; use ExtUtils::Installed; use LWP::Simple; use Ar...'Statistics::Distributions', 'Getopt::Long',...ts/ #LSU: Large subunit (23S/28S ribosomal RNAs) #SSU: Small subunit (16S/18S ribosomal RNAs) my $silva_url_LSU = 'http...1163 days ago
- #use strict; use warnings; use ExtUtils::Installed; use LWP::Simple; use Archive::Extract;...istics::Multtest', 'File::Path', 'Statistics::Distributions', 'Getopt::Long...
1161 days ago
