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Results for "LongReads"

Files

• • Jit@jit.aber

  

  getopts.pl file

  SSPACE_longread complain for getopts.pl file. To resolve this, download and have in SSPACED-Longreads folder. Cheers :)

  2145 days ago

Top-level pages

• • Jit@jit.aber

  

  Installing python-numpy !

  ....gz', 'test/600_1.fq.gz', 'test/600_2.fq.gz'], identity=0.51, iters=2, joins=5, limit=0.2, linkratio=0.7, log=', mode 'w' at 0x7f85d1de31e0>, longreads=[], mapq=10, mem=16, minLengt...

  2184 days ago

Wire posts

• • Rahul Agarwal@raag

  

  Live webinar on long reads! http://programs.pacificbiosciences.com/l/1652/2014-06-16/2w46dr #PacBio #LongReads #NGS #Omics #Seq

  3596 days ago

• • Shruti Paniwala@shruti

  

  Long-read human genome sequencing and its applications https://www.nature.com/articles/s41576-020-0236-x #LongReads #Sequencing #Genome #Review

  1420 days ago

• +3 more Wire posts

Bio-Scripts

• • Jit@jit.aber

  

  Long reads mapper bash script !

  ...rameters accepted toolName=$1 refFasta=$2 longReads=$3 thread=$4 readsType=$5...ndex $refFasta $bwaMemLoc mem $refFasta $longReads -t $thread > $fileName.out.sa...en $minimap2Loc -ax map-ont $refFasta $longReads -t $thread > $fileName.out.sa...

  2117 days ago

Tags

• • Rahul Nayak@rahul

  

  CANU genome assembly parameters !

  Choose the appropriate parameters to run Canu and run it. The assembly will take about an hour. You can use two cores (parameter -maxThreads=2) and you would like to disable cluster option, since we compute on a single Amazon server set off the option to compute on cluster useGrid=false...

  Tags: CANU, genome, assembly, parameters, NGS, LongReads, OLC

  1939 days ago