2697 days ago
Comment on "collinearity: scripts to parse and analyse MCScanX collinearity output"
This python script is by far the best for MCscan https://github.com/tanghaibao/jcvi/wiki/MCscan-(Python-version)1516 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Thanks for such an informative blog. I notice MCScan is missing. MCScan is an algorithm able to scan multiple genomes or subgenomes in order to identify putative homologous chromosomal regions, and align these regions using genes as anchors. More at http://www.ncbi.nlm.nih.gov/pubmed/222176003679 days ago