Installing Platypus on Ubuntu !
...m/ubuntu bionic-updates/main amd64 libpython3.6-dev amd64 3.6....-python3.6-dev_3.6.6-1~18.04_amd64.deb ... Unpacking python3....-g -Wall -O2 -I. -fpic -c -o md5.pico md5.c gcc -g -Wall -O2...am.c: In function ‘kftp_send_cmd’: tabix/knetfile.h:9:32: war...2017 days ago
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Bash command to install Miniconda !
(base) [wsu29@bladeamd-2 tmp]$ wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x8...-latest-Linux-x86_64.sh' saved [71785000/71785000] (base) [wsu29@bladeamd-2 tmp]$ sh Miniconda3-latest-...1553 days ago
Bash command to install bwa, samtools, picard !
(base) [wsu29@bladeamd-2 tmp]$ conda install bwa Collecting package met...uting transaction: done (my_GATK) [wsu29@bladeamd-2 tmp]$ conda install samtool...uting transaction: done (my_GATK) [wsu29@bladeamd-2 tmp]$ conda install picard...1553 days ago
Bash command to install GATK, Bedtools and SnpEff !
(my_GATK) [wsu29@bladeamd-2 tmp]$ conda install gatk Collecting package me...uting transaction: done (my_GATK) [wsu29@bladeamd-2 tmp]$ conda install bedtool...ecuting transaction: done (my_GATK) [wsu29@bladeamd-2 tmp]$ conda install SnpEff...1553 days ago
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Install Nucmer on Linux / Ubuntu
...ion, 3,521 kB of additional disk space will be used. Do you want to continue? [Y/n] Y Get:1 http://in.archive.ubuntu.com/ubuntu bionic/main amd64 gawk amd64 1:4.1.4+dfsg-1build1 [401 k...1548 days ago
Install python pip and numpy on Linux / Ubuntu
...chive.ubuntu.com/ubuntu bionic-updates/main amd64 libexpat1-dev amd64 2.2.5-3ubuntu0.2 [122 kB]...://in.archive.ubuntu.com/ubuntu bionic/main amd64 python-keyring all 10.6.0-1...paring to unpack .../09-python-dbus_1.2.6-1_amd64.deb ... Unpacking python-d...1548 days ago