Results for "ML"
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mrFAST: Micro Read Fast Alignment Search Tool
...t of reads, however it can return one "best" map location if the relevant parameter is invoked. More at http://mrfast.sourceforge.net/manual.html2946 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
...dd your own by e-mailing us) is here. If you use Satsuma in your research, please cite: Grabherr, M. G., Russell, P., Meyer, M., Mauceli, E., Alföldi, J., Di Palma, F., &...2929 days ago
- gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise gkno. http://gkno.me/how-to/install.html http://gkno.me/software.html
2921 days ago
Stand-alone programs for Bioinformatician
...a Linux 64-bit machine. For help on the bigBed and bigWig applications see:http://genome.ucsc.edu/goldenPath/help/bigBed.htmlhttp://genome.ucsc.edu/goldenPath/help/bigWig.html View the file 'FOOTER' to se...2920 days ago
- methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data...
2908 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a target depth of coverage (or vice versa). Instructions: set the read length/configu...2181 days ago
- ...r.org/biocLite.R")biocLite("clusterProfiler") https://www.bioconductor.org/packages/devel/bioc/vignettes/clusterProfiler/inst/doc/clusterProfiler.html
2894 days ago
- DarkHorse is a bioinformatic method for rapid, automated identification and ranking of phylogenetically atypical proteins on a genome-wide basis. It works by sel...
2889 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently used tools for NGS analysis as well as giving experience in writing one-liners. Copy the requi...2889 days ago
- Kaiju is a program for the taxonomic classification of metagenomic high-throughput sequencing reads. Each read is directly assigned to a taxon within the NCBI taxonom...
2884 days ago
