Bioinformatics and Sequencing Courses and Workshops
...wide range of topics: http://www.isb-sib.ch/education/training-courses.html Canadian bioinformatics also....org/funding-awards/courses-workshops http://meetings.cshl.edu/courses.html http://www.wellcome.ac.uk/Ed...3922 days ago
Hidden Markov Models, Viterbi Algorithm, Markov Chain Exploration with script
...ed CG sequence will be converted to the TG sequence. Find step wise explanationand implementation steps at http://dna.cs.byu.edu/bio465/Labs/hmm.shtml Source code with explanation...3840 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...ut sequence data. Home Page FASTX-toolkit: FASTQ/A short-reads pre-processing tools Home Page Reference-free validation of short read data. Schröder et al, PLoS One 5(9):e126...3794 days ago
List of bioinformatics open source projects/software.
.../wolbachia.biology.virginia.edu/WuLab/Software.html Metagenomics analysis softwa...ulti-Experiment Viewer http://www.tm4.org/mev.html a desktop application for th...oinformatics and phylogenetics webserver (NJ, PhyML, RAxML, MAFFT, MUSCLE, Newick...3772 days ago
List of In-silico Binding Site Prediction Tools
...re) metaPocket: http://metapocket.eml.org/ is a meta server t...is available at http://metapocket.eml.org. PocketQuery: http://poc...bii.a-star.edu.sg/tankp/run_depth.html Depth measures the closest di...hound/sitehound-download/download.html SiteHound identifies protein...3759 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
....au.dk/mailund/coasim/index.htmlcosi The cosi package is writt.../flux.sammeth.net/simulator.htmlForSim ForSim: A Forward Evolu...esb/innan/innanlab/software.htmlMendel's Accountant Mendel's A...tSLINK utility program http://mlemire.freeshell.org/software.h...3752 days ago
Perl one-liner for bioinformatician !!!
...http://genomics-array.blogspot.in/2010/11/some-unixperl-oneliners-for.html http://genomespot.blogspot.com/2013/08/a-selection-of-useful-bash-one-liners.html http://biowize.wordpress.com...3643 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis, some of them are as follows Biostrings The Biostrings package from Bioconductor provides...3639 days ago
Commercial and public next-gen-seq (NGS) software
...or NGS, microarray, and qPCR data analysis. Streamlined analysis workflows for: C...na, SOLiD, and Helicos. Written by Michael Strömberg at Boston College. Win/...Ossowski, Korbinian Schneeberger, and Gunnar Rätsch. A paper is available. R...3534 days ago
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