Results for "MS"
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This histone database can be used to explore the diversity of histone proteins and their sequence variants in many organisms. The resource was established to better understand how s...2908 days ago
- LoRMA is a tool for correcting sequencing errors in long reads such those produced by Pacific Biosciences sequencing machines. Publication: L. Salmela, R. Walve,...
2181 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
...limitation on ge-nome size or phylogenetic distances. We successfully simultaneously clustered 169 genomic and transcriptomic datasets from 4 kingdoms, achieving 100% accuracy at s...2894 days ago
- ...transferred, since they are highly conserved among closely related organisms. One unique and powerful fea...r sequence similarity or novelty compared to taxonomically related organisms. DarkHorse is configura...
2889 days ago
- ...the transfer of genetic material between organisms, is crucial for genetic innov...ome architecture. Existing HGT detection algorithms rely on a strong phylogenetic...etween closely related strains. The method confirms candidate transferred genes b...
2889 days ago
Linux command line exercises for NGS data processing
...and do all the processing inside: [uzi@quince-srv2 ~/]$ cp -r /home/opt/MScBioinformatics/linuxTutorial...from the keyboard and gives them to the operating system. Most Linux systems utilize Bourne Again SHell (b...2889 days ago
- ...esigned to be self-contained and hands-on, meaning that you only need to install SAMtools, and no other tools, and sample data sets are provided. Terms in bold are also explained in...
2888 days ago
- ...ulate diploid genomes with SNPs and insertion/deletion (INDEL) polymorphisms, and simulate reads with unif...errors, but this can be partly compensated by simulating INDEL polymorphisms.Wgsim outputs the simulated p...
2888 days ago
- ...de. CSBB is currently available on Linux, UNIX, MAC OS and Windows platforms. Currently CSBB provides 13...pression to z-scores when comparing expression data from different platforms. More at https://github...
2882 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
...r assigning taxonomic labels to metagenomic DNA sequences. Previous programs designed for this task have b...y expensive, forcing researchers to use faster abundance estimation programs, which only classify small su...2883 days ago
