Install Varscan on Ubuntu / Linux !
...y and is hosted on github. To use Varscan we simply need to download the distributed jar file into our ~/workspace/bin. As with the other java programs which have already been insta...838 days ago
314 days ago
Raku script to calculate GC content !
sub calculate-gc-content(Str $sequence) { my $gc-count = $sequence.comb(//).elems; my $total-bases = $sequence.chars; return $gc-count / $total-bases * 100; } m...127 days ago
Raku script to find overlaps between two bed files !
#!/usr/bin/env raku # Check if the correct number of arguments are provided if @*ARGS.elems != 2 { say "Usage: ./compare_bed_files.raku file1.bed file2.bed"; exit 1;...109 days ago