2824 days ago
2758 days ago
CISA: Contig Integrator for Sequence Assembly
...s generated by the state-of-the-art assemblers and the hybrid assemblies merged by existing tools. This tool is implemented in Python and requires MUMmer and BLAST+ to be installed on...2703 days ago
GARM:Genome Assembly, Reconciliation and Merging
...he pipeline is based mainly implemented using Perl scripts and modules and third-party open source software like the AMOS (Myers et al., 2000) and MUMmer (Kurtz et al., 2004) packages...2699 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
...following tools installed and in $PATH, or added to $binpath in the tool: Newbler (specifically runAssembly)Minimus2 (part of AMOS, also requires MUMmer)2699 days ago
2640 days ago
Dot, an interactive viewer for genome-genome comparison
...alize genome-genome alignments in order to evaluate new assemblies and perform exploratory comparative genomics. Dot supports the output of MUMmer’s nucmer aligner the mo...2308 days ago
MUMmer4: A fast and versatile genome alignment system
MUMmer4, a substantially improved version of MUMmer that addresses genome size constraints by c...t suffix tree data structure at the core of MUMmer to a 48-bit suffix array, and...oretical limit on the input size of 141Tbp, MUMmer4 can now work with input sequ...2288 days ago
2157 days ago
mScaffolder: A comparative genome scaffolding tool
A comparative genome scaffolding tool based on MUMmer mScaffolder scaffolds a genome using an existing high...e as the reference. It aligns the two genomes using nucmer utility from MUMmer and then orders and orients t...2156 days ago