Recovery of complete genomes from metagenomes
...microbial genomes from metagenomes, as described in: Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes Mads Albertsen,&...2334 days ago
CAMSA :: a tool for Comparative Analysis and Merging of Scaffold Assemblies
...shion allows to simultaneously work with scaffold assemblies obtained from any in silico and in vitro techniques, supporting multiple existing formats via built-in...2332 days ago
GPOPSIM: a simulation tool for whole-genome genetic data
...enome structures and trait genetic architectures. It provides flexible parameter settings for a wide discipline of users, especially can simulate multiple genetically correlated traits...2313 days ago
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus
...of dat HiSeq/MiSeq (100-500bp) Unitigs 454, ... proovread maps high coverage data to pacbio reads (bwa mem, blasr, daligner) in multiple iterations....2324 days ago
AliTV—interactive visualization of whole genome comparisons
AliTV, which provides interactive visualization of whole genome alignments. AliTV reads multiple whole genome alignments or automatically generates alignments from the provided data. O...2319 days ago
mojolicious: a next generation web framework for the Perl programming language.
...es/A+, keep-alive, connection pooling, timeout, cookie, multipart and gzip compression support. Built-in non-blocking I/O web server, supporting multiple event loops as well as option...2317 days ago
Genome assembly stats plotting
...nerated using javascript from a common (JSON) data structure, allowing toggling between alternative views, and each can be applied to a single or multiple assemblies to allow direct co...2271 days ago
Multi-CAR: a tool of contig scaffolding using multiple references
...ding tool CAR into a new one called Multi-CAR such that it can utilize multiple complete genomes of related o...karyotic genomes and also compared its accuracy performance with other multiple reference-based scaffolding t...2264 days ago
SCUBAT: Scaffolding Contigs Using Blat And Transcripts
SCUBAT (Scaffolding Contigs Using BLAT And Transcripts) uses any set of transcripts to identify cases where a transcript is split over multiple genome fragments and attempts to use this information to scaffold the genome.2257 days ago
MMseqs2.0: ultra fast and sensitive protein search and clustering suite
...n source GPL-licensed software implemented in C++ for Linux, MacOS, and (as beta version, via cygwin) Windows. The software is designed to run on multiple cores and servers and exhibit...2248 days ago