Metassembler: merging and optimizing de novo genome assemblies
Metassembler combines multiple whole genome de novo assemblies into a combine...blies. Genome assembly projects typically run multiple algorithms in an attempt to f...present our metassembler algorithm that merges multiple assemblies of a genome into a...2201 days ago
MIX: Combining multiple assemblies from NGS data
Mix is a tool that combines two or more draft assemblies, without relying on a reference genome and has the goal to reduce contig fragmentation and thus speed-up genome...2201 days ago
2173 days ago
RestrictionDigest: A powerful Perl module for simulating genomic restriction digests
...e information of the simulation. It can simulate single-enzyme digestion, double-enzyme digestion and size selection process. It can also analyze multiple genomes at one run and genera...2166 days ago
2194 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
...e form of heat colors which can be highly advantageous in the scientific interpretations and research work. The package provide multiple features like visualizing multiple sets, chromosome heat-maps, g...1862 days ago
GenomeMapper: Simultaneous alignment of short reads against multiple genomes
...gned for accurate read alignments. It quickly aligns millions of reads either with ungapped or gapped alignments. It can be used to align against multiple genomes simulanteously or aga...2184 days ago
Epiviz: an interactive visualization tool for functional genomics data.
Epiviz is an interactive visualization tool for functional genomics data. It supports genome navigation like other genome browsers, but allows multiple visualizations of data within ge...2139 days ago
FinisherSC:a repeat-aware tool for upgrading de novo assembly using long reads
...re is the command to run the tool: python finisherSC.py destinedFolder mummerPath If you are running on server computer and would like to use multiple threads, then the following c...2098 days ago
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
Mulan: Multiple-sequence local alignment and visualization for s...novel method and a network server for comparing multiple draft and finished-quality se...conserved transcription factor binding sites in multiple alignments. In addition, Mula...2093 days ago