Best book Titles for Learning Bionformatics
...ell, 2003, O'Reilly Sequence Analysis in a Nutshell: A Guide to Common Tools and Databases, Scott Markel, Darryl Le...Laboratory Manual of Proteome Analysis , Reiner Westermeier, Tom Nav...of Gene Expression Microarray Data, T. P. Speed (Editor), 2003, CRC...3919 days ago
Most Commonly used Awk by Bioinformatician
Awk is a programming language that is specifically designed for quickly manipulating space delimited data. Al...3913 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...esign Statistical design and analysis of RNA sequencing data. Auer & Doerge, Genetics...expressed genes from RNA-seq data. Wang et al., Bioinformatics. 26(...package called FSTpoolit for analysis of the resulting sequence rea...toring and searching sequence data in the cloud. OConnor et al, BMC...3780 days ago
List of bioinformatics open source projects/software.
...-based workflow framework for data analysis Armadillo workflow platf...cess to more than 150 genomic analysis tools GeWorkbench http://wi...xploration of diverse genomic data IntAct http://www.ebi.ac.uk/int...omkappa/ PromKappa (Promoter analysis by Kappa) software program us...3758 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...?source=navbarGASP Genometric Analysis Simulation Program. A sof...osition of typical metagenome data sets http://ab.inf.uni-tuebingen....ividual-based program for the analysis of quantitative traits with e...odel for population viability analysis (PVA). http://www.vortex9.org...3738 days ago
List of In-silico Binding Site Prediction Tools
...so available enabling further analysis. PROSURFER: http://163.4...query protein to members of a database of protein 3D structures and...n structure visualization and analysis but has been used more often...ween surfaces from coordinate data supplied in a PDB file. MSPocket...3745 days ago
Linux for bioinformatician !!!
Linux, free operating system for computers, provides several powerful admin tools and utilities which will help y...o manage your systems effectively and handle huge amount of genomic/biological data wit...3706 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinformaticians mung and wrangle around massive amounts of genomics text. There are several "standardized"...3629 days ago
Next generation sequencing in R or bioconductor environment
...bioconductor packages for NGS data analysis, some of them are as foll...data. Documentation ChIP-Seq Analysis Packages Bioconductor provid...ing sample code uses the test data set from the above BayesPeak pack...of RNA-Seq experiments is the analysis of splice junctions. The foll...3626 days ago
Commercial and public next-gen-seq (NGS) software
...or Next Generation Sequencing data analysis. JMP Genomics - Next gen...Illumina, SOLiD and Roche-FLX data formats and allows the user to mo...e genomes, and carry out post-analysis. ZOOM is developed to be high...ser/Alignment Viewer/Assembly Database EagleView - An information-ri...3520 days ago