MSAProbs - Parallel and accurate multiple sequence alignment
MSAProbs is a well-established state-of-the-art multiple sequence alignment algorithm for protein sequences....-memory systems using MPI to overcome high memory overhead barrier and achieve good pa...1767 days ago
RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs
Alonge M, Soyk S, Ramakrishnan S, Wang X, Goodwin S, Sedlazeck FJ, Lippman ZB, Schatz MC: Fast and accurate reference...f this tool is on practicality and therefore has the following features: Good pe...1658 days ago
WOS-C Women Scientist Scheme KIRAN-IPR
Women Scientist Scheme WOS-C is one among the most coveted programs that Women Scientists in India apply for. It...s for a year, this, in turn, allows them to even work from home and maintain a good wo...1596 days ago
Π-cyc: A Reference-free SNP Discovery Application using Parallel Graph Search
Reference free SNP search for comparative population genomics: multiple samples run simultanously. **experimental...parallel mode using graph decomposition then use filtering method to generate good qu...1564 days ago
QuorUM: An Error Corrector for Illumina Reads
We produce trimmed and error-corrected reads that result in assemblies with longer contigs...hat it is the best performer in most metrics we use. QuorUM is efficiently implemented making...1557 days ago
Tadpole: an assembler, error-corrector, and read-extender
Tadpole is a kmer-based assembler, with additional capabilities of error-correcting and extending reads. It does...complicated graph analysis or scaffolding, and therefore, is not particularly good fo...1557 days ago
Genobuntu: Package for Next Generation Sequencing and Genome Assembly
Genobuntu is a software package containing more than 70 software and packages oriented towards NGS. In its curr...time and energy needed to build software workstations and it can also act as a good te...1453 days ago
MMseqs2: ultra fast and sensitive sequence search and clustering suite
MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein and nucleot...he software is designed to run on multiple cores and servers and exhibits very good sc...1208 days ago
Calling variants in non-diploid systems
The main challenge associated with non-diploid variant calling is the difficulty in distinguishing between the se...man mitochondrial DNA although the same approaches will work equally good on...1049 days ago
QuasR: Quantification and annotation of short reads in R
The QuasR package (short for Quantify and annotate short reads in R) integrates the functio...up to quantification. A single R script can contain all steps of a complete analysis, making...1001 days ago