2882 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Sin...GapFiller seeks to close the gap from each edge in an iterative manner. From a good nu...2694 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms of the actions to be execut...is acceptable. Also, Loop .... endloop is also VERY good and is language independent....declarations. E.g. "initialize count to zero" is a good en...2667 days ago
2359 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED data...inutes per genome. This is the best way to get good quality annotation in a flash...hat the quality of functional information is not as good as...2340 days ago
Bioinformatics Web Application Development with Perl
Perl's second wave of adoption came from the growth of the world...top of the program, and maybe making a subroutine are gone. The...e. These are neither the only good possibilities (think of POE o...more). Yet if you want three good options to choose between, st...nginx, or anything else. Any good mo...2329 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
The purpose of this cheat sheet is to introduce biologist and bioinformatician to the...hmod 600 file — you can read and write - good for files chmod 700 file — you can read, write, and execute - good fo...2288 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used to build just about anythi...to Program Lectures on scientific computing with python - J.R. Johansson (2.7) Making...2263 days ago
Installing Bio::SCF perl module
Most Perl modules are written in Perl, some use XS (they are wri.../home/jitendra/Downloads/io_lib-1.9.0'Making all in readmake[2]: Entering.../jitendra/Downloads/io_lib-1.9.0/read'Making all in progsmake[2]: Enteri...cking if your kit is complete...Looks goodGen...2226 days ago
Tools for Protein-Protein Docking !
Predicting the structure of protein–protein complexes using docking approaches is a difficult problem whose...ng MolFit Global rigid search: FFTShape complementarity Clustering of good so...2210 days ago