3959 days ago
Phylogenetic for Bioinformatics
Biologists estimate that there are about 5 to 100 million species of organisms livin...ormatik_WS0405/phylogeny_script.pdf Phylogeny.fr is a free, simple to use web service dedicated to reconstructing a...3959 days ago
Best book Titles for Learning Bionformatics
Nothing can add to our intellect more than reading a book. In book...ntroduction to Computational Biology - Maps, sequences and genomes, Mich...cal Approaches to Gene Order Dynamics, Map Alignment and the Evolution of...), Luke Alphey, 1997, Springer Verlag Automat...3931 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...pression estimation with read mapping uncertainty. Li et al, Bi...ubMedCentral [Geoseq is a web service that allows searching deep...r rapid and efficient genetic mapping. Andolfatto et al. Genome Res...oudBioLinux on the Amazon Web Services Elastic Compute Cloud (EC2)...3793 days ago
List of bioinformatics open source projects/software.
...todock.scripps.edu/ suite of automated docking tools Biochemi...biomoby.org/ registry of web services BioPerl http://www.biope...lows users to combine digital map data with information about bio...lysis using a supra-hexagonal map Taverna workbench Tool for desi...3770 days ago
List of In-silico Binding Site Prediction Tools
...and made accessible as a web service by Raquel Norel. ConCavity.../concavit​y/). MultiBind and MAPPIS: http://bioinfo3d.cs.tau.ac....erties. The second webserver, MAPPIS (http://bioinfo3d.cs.tau.ac.il...efining ligand binding sites. Automatically selected ligand binding...3757 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinformaticians...$t}' #Find total number of words in the fileperl -alne 'map {...and 35.perl -le '$n=10; $min=5; $max=15; $, = " "; print map { i...3641 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and re...- SHORE, for Short Read, is a mapping and analysis pipeline for...a), parse caf, ace and bowtie map files, clean and filter conti...Genentec. C/Perl for Unix. gnumap - The Genomic Next-generation...pensates for variation in the mappabi...3532 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app tha...d information is presented the app switches to web services access to SGD, and then for...of the data provided by this app accesses the SGD service using a method that is changi...3555 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and ref...RE - SHORE, for Short Read, is a mapping and analysis pipeline for...from EMBL. C for POSIX. * GenomeMapper - GenomeMapper is a short...ST & mrsFAST are designed to map s...ation. From the Sanger Centre. * MapView...3256 days ago