Results for "Match"
Bookmarks
Bioinformatics require some match skills, therefore I decided to provide this wonderful math eBooks links to the BOL community. Please add ur links/bookmarks in comment section.3796 days ago
- ...asis. It works by selecting potential ortholog matches from a reference database of amino acid sequences, then using these matches to calculate a lineage prob...only query sequences, but also their database match partners to be evaluated for...
2874 days ago
- ...aligned globally (end-to-end) onto reference chromosomes, ignoring: matches not satisfying cut-offs (--identity and --overlap) suboptimal matches (only best match of each qu...
2693 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...ntification programs, and usually falls under 5%. GC-Content Indifferent: Prodigal performs well even in high GC genomes, with over a 90% perfect match (5'+3') to the Pseudomon...2684 days ago
- ...bases in the overlapping region using the complementary strand. When mismatches occur in the overlapping re...s as follows:1.Find the positions where the forward and reverse primers match best above the threshold and...
2659 days ago
- ...to a reference genome using nucmer (from MUMmer package) $ nucmer -maxmatch -l 100 -c 500 REFERENCE.fa AS...lse positives when the number of Ns in the scaffolded sequence does not match perfectly to the distance in...
2152 days ago
Many-to-many pairwise alignments of two sequence sets
...x is read that contains values for every possible residue or nucleotide match. Needleall finds the alignmen...ssible score where the score of an alignment is equal to the sum of the matches taken from the scoring matr...2147 days ago
BLAST options, setting and defaults
...equence of fewer than twenty residues, PatMatch is the best choice. Anot...s to use the default default = 2 Nucleic match:reward for a match in the BLA...size:the size of the initial word that must be matched between the database and th...1973 days ago
LTR_Finder: an efficient program for finding full-length LTR retrotranspsons in genome sequences.
LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences. The Program first constructs all exact match pairs by a suffix-array based algori...1939 days ago
