Results for "Mate pair sequencing"
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Microbiome analysis using a single application MEGAN6 is a comprehensive toolbox f...s you to work with hundreds of samples containing hundreds of millions of sequencing reads. Blast-like analysis ca...2860 days ago
- Genome STRiP (Genome STRucture In Populatio...and genotyping structural variations using sequencing data. The methods are d...ogeneous data sets, including variations in sequencing depth, read lengths and mixtures of paired and single-end reads. A minimum o...
2817 days ago
- Bambus 2.0, the second generation Bambus scaffolder available as an open source package. While most other...icular, Bambus is able to accept contig linking data other than specified by mate-pairs. Suc...
2838 days ago
- Recent technological progress has greatly facilitated de novo genome sequencing. However, de novo a...
2830 days ago
- ... assembled contigs, paired-end and/or mate pairs sequencing libraries and retu...ing of genome fragments using paired-end and/or mate-pairs reads gap closing R...or Sanger) and library types (paired-end, mate pairs, fosmids) modular: every ste...
2822 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly pr...embly). It uses information from paired-end/mate-pair/long read...the information provided by the paired-end/mate-pair/long reads (for further...long-reads from third-generation sequencing technologies (PacBio or Oxfor...2814 days ago
- These tutorials are written for hundreds...with large volume of next-generation sequencing (NGS) data. NGS technologies...ght a dramatic shift in the world of sequencing. Merely five years back, geno...us government agencies. The tasks of sequencing and assembly were handled by...
2818 days ago
GAGE : Genome Assembly Gold-standard Evaluation
GAGE is an evaluation of the very latest large-scale genome assembly algorithms. We...ent of genome assembly software in a rapidly changing field of next-generation sequencing. The main results of GAGE hav...2816 days ago
- VALET is a pipeline for performing de novo validation of metagenomic as...hat should hold true for a correct assembly (e.g., mate-pairs are aligned at the correct d...same data-sets, VALET also reports an overall estimate of th...
2801 days ago
- The accurate description and annotation of structural variants can be complex. This is due to the different...reported from traditional cytogenetic coordinates down to the actual base pair posit...
2791 days ago
