Results for "Mate pair sequencing"
Top-level pages
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with.../research.nhgri.nih.gov/gasp/GemSIM Next generation sequencing read simulator http://s...http://bit.ly/rlsim-gitpIRS Profile-based Illumina pair-end reads simulator https://code.go...3750 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinformaticians mung and wrangle around massive amounts of genomics text. There are several "standardized" file format...3641 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data ana...ctionality for short read sequences produced by high throughput sequencing technologies. While support is provided for many sequencing technologies, this package is...3638 days ago
Commercial and public next-gen-seq (NGS) software
...eed about 20-25X coverage and paired reads. Developed by Daniel Zerbin...ore accurate base quality estimates to the 454 pyrosequences. Develope...ompleted will handle next-gen sequencing data. A partially implemented...library construction size estimates, and uses it to improve the spatia...3532 days ago
- Since few years miRNA has shown to play i...and tools related with miRNA: miRNA Sequencing data analysis : http://t...: http://starbase.sysu.edu.cn/ Sequencing based miRNA DB : http://...iction.html Idea of analysing miRNA Sequencing data : http://www.illumina.c...
3509 days ago
Apps for Busy Bioinformatics Researchers !!!
...e opening and analysis of DNA sequencing files - ab1. It includes hand...yzing cases with whole genome sequencing data that have been published...published molecular time estimates bearing on the divergence of two c...e for you a unique melody intimately based on your 23andMe genome info...3554 days ago
A guide for complete R beginners !
This tutorial is intended to introduce users quickly to the basics of R, focusing on a....g. analysis of microarray experiments and Next-Gen sequ...ext time you use R. Ability to turn it into an automated script to perform again and again...3374 days ago
Software packages for next gen sequence analysis
...eed about 20-25X coverage and paired reads. Developed by Daniel Zerbin...es from the 454 Life Sciences sequencing machines. It was designed to...ore accurate base quality estimates to the 454 pyrosequences. Develope...library construction size estimates, and uses it to improve the spatia...3256 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...on: command line program; automated pipeline; utilizes BWA, BLAT, and...ed by Sanger Sequencng Input:paired-end Illumina reads from 1001 geno...rdquo;can accept a variety of sequencing inputs and configurations&rdq..., command line interface; estimates variance by all SNPs; 5 main funct...2922 days ago
- ...dicates that the first 5 base pairs of the read align to the reference, followed by 2 base pairs, which are unique to the rea...mozygous mutation of G to A. mate-pair: in paired-end sequencing, both ends of a single...her the read is one part of a paired-end read, whether the read aligns...
2882 days ago
