Results for "Membrane Protein"
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PolyPhen-2: Prediction of functional effects of human nsSNPs
PolyPhen-2 (Polymorphism Phenotyping v2) is a tool which predicts possible impact of an amino acid substitution on the structure and function of a human protein using straightforward physical and comparative considerations.2913 days ago
- A free extensible and customizable gene annotation portal, a complete resource for learning about gene and protein function. http://biogps.org/#goto=welcome
2913 days ago
- ...of phylogenetically atypical proteins on a genome-wide basis. It w...x (LPI) score for each genome protein. LPI scores are inversely pr...s of horizontally transferred proteins, but can also serve as an in...phylogenetic granularity and protein sequence conservation. Users...
2883 days ago
- Kaiju is a program for the taxonomic classifi...abase containing microbial and viral protein sequences. By default, Kaiju...icrobial subset of the non-redundant protein database nr used by NCBI BLAS...ptionally allowing mismatches in the protein alignment. The search can pro...
2878 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than...ments for benchmarking. PALS >Whole-genome alignment. PREFAB >Protein Reference Alignment Database....2870 days ago
AutoDock Vina: an open-source program for doing molecular docking.
AutoDock Vina is an open-source program for doing molecular docking. It was desig...cs Lab at The Scripps Research Institute. It is especially effective for protein-ligand docking. AutoDock 4 is...1431 days ago
GeneValidator - Identify problems with predicted genes
GeneValidator helps in identifing problems with gene predictions and provide useful in...Priyam A, Bustos C & Wurm Y. 2016. GeneValidator: identify problems with protein-coding gene predictions. ...2818 days ago
- In this exercise, a previously annotated gene will be used to measure the accuracy of...e used to annotate the sequence. Both search by signal, content and homology (protein and cDNA sequences) methods w...
2818 days ago
Method in Comparative genomics !!
We present methods for the automatic determination of genom...nge. We present methods for the identification of protein-coding genes based on their p...essure to conserve the reading frame of functional proteins and developed a test for gen...2743 days ago
- Gene finding in eukaryotic genomes is notoriously difficult to automate. The task is to design a work flow with a minimal set of tools that would reach state-of-the-art...
1960 days ago
